As always, I'm sure I'll figure out how just a few minutes after I post this, but I'll do it anyway. In the beginning cinamatic of Two Betrayels (misspelled, I know), she takes the Index out of the controll room's main panels, and waves it around in GS's face. Now, not to belittle the technology of the day, but I though Cortana was an AI, sometimes taking shape as a holograph. Holographs, of course, are not actual physical form, just light made to look like physical form. How, then, could she pick it up? Admittedly, it might just be a hologram of the Index, but the fact that it's missing from the controll room is what prevents GS from obliterating the galaxy. Finally, what does the MC do with it? He doesn't take it out of the controll room, just Cortana's memory chip. Does it just dissapear? Perhaps Cortana scrambles it somehow...
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